Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015947669.1_cds_XP_016489250.1_79796
CDS Infomation

[gene=LOC107809170] [db_xref=GeneID:107809170] [protein=LOW QUALITY PROTEIN: heat shock factor protein HSF8-like] [exception=unclassified translation discrepancy] [protein_id=XP_016489250.1] [location=complement(join(41151..41197,41200..42397,48736..49014))] [gbkey=CDS]
Sequence

ATGACGTCCAATTCTTCCGCTGCCGCGGACGGAGGAGGAGGAGGAGCACCGCCGTCACAG
CCGGCGCCGGCGCCTATGCCAAGTGCGAATGCGCCTCCGCCATTTCTGGTGAAGACGTAT
GACATGGTGGATGACCCGAGTACGGATAAGATCGTGTCGTGGGGCCCAGCAAACAATAGC
TTCGTGGTTTGGGACCCACCGGAGTTTGCTAGGGACCTTCTTCCGAAGTACTTCAAGCAC
AATAACTTCTCCAGCTTCGTTCGCCAATTGAATACTTATGGTTTTAGAAAGGTTGATCCA
GACCGCTGGGAATTTGCTAACGAGGGATTCTTAAGAGGTCAGAAACACCTGCTTAGAAGT
ATAAGTCGGCGTAAACCTGCTCATGGACATGCTCAACAACAGCAGCAGCCACATGGACAG
AGTGCATCTGTTGGGGCTTGTGTTGAGGTTGGGAAATTTGGACTTGAAGAAGAGGTTGAG
AGGCTGAAAAGGGACAAGAACGTGCTTATGCAAGAGCTGGTTAAGCTCAGACAACAGCAG
CAAACTACTGACAATCAGTTGCAAGGGATGGTGCAGCGCCTTCAGGGTATGGAACAACGA
CAACAACAGATGATGTCATTTCTGGCAAAAGCTGTTAACAGCCCTGGATTCTTGGCACAG
TTTGTACAGCAGCAAAATGAGAGTAATAGGCGCATAGCTGAAGGCAGCAAGAAACGGAGG
ATTAAGCAAGATATTGAATCACAGGATCATTCGGTTACCCCTGCGGATGGACAGATTGTG
AAGTACCAACCTGTGATGAATGAGTCAGCAAAGGCAATGCTTAGGGAGCTTTCAAAACTG
GACTCTTCTCCTAGATTAGAGAACTTCAGCAACAGTCCTGAAAGTTTCCTGATTGGTGAT
GGTTCACCCCAATCTAATGCATCTTCTACTCGTGTTTCAGGAGTCACTCTTCAGGAAGTC
CCACCAACTTCTGGCCAGCCTTTGCTGAGTACAGCTTCAGCAATTGCCGGTCAAAGTTCA
TCTTCTGAAATTACCAATAACCAGTTGTCAGAGATAAGCTCATTGGTAGGAGCTCACGAT
TTGCCTCCTGTTTCGCTTTCTGCGTCAGATATGATTATGCCTGAGTTATCACAGTTACAA
GAAATTTTGCCCGGAAACAATATGGATATTATCAGATCTGAGATGGAGAATGATTCTTTC
ATGGATTCTTCAGTTGGAGTAGACGAAAAAATGCCATTAGATATCGGTAGTTTCTCTCCT
GATCCTCAAATTGAATGGCAGACTGGTTTGCTGGACGATATAGGAGAGCTTCCTAGTGTC
GGTGACCCCTTCTGGGAAAAGTTTCTTCAAAGCCCTTCCCCTGGCGAGACAGAGGAGATG
GACCTTGCTGCAATGGATGATATTTCCAATGAAACCAAGCCACAAGAAAATGGATGGGAT
AAAACTCAGCACATGGACCATCTTACTGAACAAATGGCTACTAACATCAAACAATCAAAA
AGTATGATCTGGTTATCAAAGTAA

Peptide Sequence

PEP ID

XP_016489250.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: heat shock factor protein HSF8-like [Nicotiana tabacum]
Sequence

MTSNSSAAADGGGGGAPPSQPAPAPMPSANAPPPFLVKTYDMVDDPSTDKIVSWGPANNS
FVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRS
ISRRKPAHGHAQQQQQPHGQSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVKLRQQQ
QTTDNQLQGMVQRLQGMEQRQQQMMSFLAKAVNSPGFLAQFVQQQNESNRRIAEGSKKRR
IKQDIESQDHSVTPADGQIVKYQPVMNESAKAMLRELSKLDSSPRLENFSNSPESFLIGD
GSPQSNASSTRVSGVTLQEVPPTSGQPLLSTASAIAGQSSSSEITNNQLSEISSLVGAHD
LPPVSLSASDMIMPELSQLQEILPGNNMDIIRSEMENDSFMDSSVGVDEKMPLDIGSFSP
DPQIEWQTGLLDDIGELPSVGDPFWEKFLQSPSPGETEEMDLAAMDDISNETKPQENGWD
KTQHMDHLTEQMGXTNIKQSKSMIWLSK

Transcript Sequence

Gene sequence data has not been registered.